O2k-Publications: Topics

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Oroboros Instruments

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O2k-Publications: Topics

Mitochondria and Cell Research - the Oroboros Ecosystem
O2k-Publications: chronological
Publications in the MiPMap


» Recent O2k-Publications
» O2k-Publications - chronological: 3500


Mitochondrial physiology: MiP areas

# O2k-Publications MitoPedia: Comment O2k Total
1 mt-Medicine (332 entries) 332 453
2 Exercise physiology;nutrition;life style 586 790
3 Comparative MiP;environmental MiP 279 414
4 Pharmacology;toxicology 570 671
5 mt-Biogenesis;mt-density 229 301
6 Genetic knockout;overexpression 460 518
7 Instruments;methods 197 292


Pathological states

Alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total
1 Aging;senescence 217 325
2 Alzheimer's 55 74
3 Autism 2 4
4 Cancer 277 367
5 Cardiovascular 140 181
6 COPD 8 10
7 Diabetes 270 352
8 Inherited 52 72
9 Infectious 26 31
10 Myopathy 52 62
11 Neurodegenerative 135 183
12 Obesity 177 241
13 Parkinson's 52 81
14 Sepsis 56 65
15 Other 196 258


Stress conditions

Alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total
1 Cell death White, brown, beige fat tissue 74 124
2 Cryopreservation 32 55
3 Hypoxia 66 96
4 Ischemia-reperfusion 278 379
5 Oxidative stress;RONS 492 690
6 Permeability transition 54 73
7 Temperature: hypothermia; hyperthermia 82 99


Organisms

Mammals
# O2k-Publications MitoPedia: Comment O2k Total
1 Human 1091 1495
2 Pig 76 88
3 Horse 22 28
4 Bovines 19 61
5 Cat 2 3
6 Dog 11 28
7 Rabbit 16 20
8 Mouse 975 1170
9 Rat 716 931
10 Guinea pig 18 31
11 Other mammals including only mammals that are not listed as mammalian species above 45 73
Model organisms
# O2k-Publications MitoPedia: Comment O2k Total
1 Chicken Birds) 3 4
2 Zebrafish Fishes) 10 15
3 Drosophila Hexapods) 47 61
4 Caenorhabditis elegans Nematodes) 15 22
5 Artemia Crustaceans) 11 18
6 Saccharomyces cerevisiae Fungi) 50 68
7 Comparative MiP 279 414


Non-mammals
# O2k-Publications MitoPedia: Comment O2k Total
1 Birds Chicken) 10 20
2 Reptiles turtles, lizards, snakes, crocodiles, alligators 10 14
3 Amphibians frogs, toads, salamanders 9 13
4 Fishes bony fishes, carilaginous fishes (sharks, rays, skates) and jawless fishes (hagfish, lampreys); » Zebrafish 93 122
5 Hexapods insects, springtails; » Drosophila 27 36
6 Crustaceans crabs, shrimp, barnacles, etc.; » Artemia 18 36
7 Annelids polychaetes, e.g. lugworm Arenicola marina, oligochaetes, leeches 3 16
8 Molluscs gastropods, cephalopods, bivalves 17 27
9 Nematodes » Caenorhabditis elegans 3 8
10 Other invertebrates urocordates (e.g. ascidians, sea squirts); cephalochordates (amphioxus, lancelets); echinoderms; chelicerates (e.g. spiders, scorpions, horseshoe crabs); myriapods (millipedes, centipedes); gastrotrichs; rotifers; ctenophores; nemerteans; tardigrades; platyhelminthes; cnidaria; porifera; ... 11 15
11 Fungi yeast, molds, mushrooms, etc.; » Saccharomyces cerevisiae 48 59
12 Plants 25 44
13 Protists amoebas, ciliates, trypanosomes, dinoflagellates, diatoms, green algae, etc. 26 38
14 Eubacteria true bacteria, cyanobacteria, spirochetes 19 35
15 Archaea archaebacteria 0 6


Tissues and cells

Tissues - alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total
1 Fat White, brown, beige fat tissue 136 167
2 Genital 74 103
3 Heart 564 736
4 Kidney 109 136
5 Liver 513 664
6 Lung;Gill 43 55
7 Nervous system 481 576
8 Skeletal muscle 854 1060


Cell types - alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total
1 Blood cells 185 232
2 Endothelial;epithelial;mesothelial cell 197 226
3 Fibroblast 161 206
4 Islet cell;pancreas;thymus 39 49
5 Lymphocyte 49 62
6 Platelet 89 105
7 Stem cells 24 34


Cell lines - alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total
1 CHO 13 13
2 HEK 66 83
3 HeLa 25 38
4 Neuroblastoma 28 31
5 HUVEC 19 22
6 Macrophage-derived cell lines 22 31
7 Other cells and cell lines 251 288


Preparations

# O2k-Publications MitoPedia: Comment O2k Total
1 Living organism 38 118
2 Intact organ 21 32
3 Living cells 833 928
4 Permeabilized cells 493 521
5 Permeabilized tissue 860 943
6 Homogenate 261 294
7 Isolated mitochondria 996 1258
8 SMP Submitochondrial particles 9 21
9 Chloroplasts 1 9
10 Enzyme 38 66
11 Oxidase and biochemical oxidation 36 46


Enzymes

Alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total
1 Adenine nucleotide translocase ANT 20 23
2 Complex I CI 400 483
3 Complex II;succinate dehydrogenase CII 354 422
4 Complex III CIII 268 312
5 Complex IV;cytochrome c oxidase CIV 368 434
6 Complex V;ATP synthase CV 194 232
7 mt-Inner membrane transporter 29 41
8 Marker enzyme 48 68
9 Supercomplex 38 50
10 TCA cycle and matrix dehydrogenases Tricarboxylic acid cycle 68 87
11 Uncoupling protein 53 58


Regulation

Alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total
1 ADP ADP kinetics 143 186
2 ATP production 62 94
3 Aerobic glycolysis 39 74
4 Amino acid 9 18
5 Calcium 69 101
6 Coupling efficiency;uncoupling 68 126
7 Cyt c Cytochrome c 36 44
8 Fatty acid FA substrate kinetics 112 134
9 Flux control 44 69
10 Inhibitor Inhibitor kinetics 126 154
11 Ion;substrate transport 47 86
12 mt-Membrane potential Mitochondrial membrane potential
Questions.jpg


Click to expand or collaps
» Keywords: Force and membrane potential
Fundamental relationships
» Force
» Affinity
» Flux
» Advancement
» Advancement per volume
» Stoichiometric number
mt-Membrane potential and protonmotive force
» Protonmotive force
» Mitochondrial membrane potential
» Chemical potential
» Faraday constant
» Format
» Uncoupler
O2k-Potentiometry
» O2k-Catalogue: O2k-TPP+ ISE-Module
» O2k-Manual: MiPNet15.03 O2k-MultiSensor-ISE
» TPP - O2k-Procedures: Tetraphenylphosphonium
» Specifications: MiPNet15.08 TPP electrode
» Poster
» Unspecific binding of TPP+
» TPP+ inhibitory effect
O2k-Fluorometry
» O2k-Catalogue: O2k-FluoRespirometer
» O2k-Manual: MiPNet22.11 O2k-FluoRespirometer manual
» Safranin - O2k-Procedures: MiPNet20.13 Safranin mt-membranepotential / Safranin
» TMRM - O2k-Procedures: TMRM
O2k-Publications
» O2k-Publications: mt-Membrane potential
» O2k-Publications: Coupling efficiency;uncoupling


86 134
13 Oxygen kinetics 89 120
14 Q-junction effect 6 7
15 Redox state 44 68
16 Substrate Fuel substrate kinetics 170 221
17 Temperature Temperature dependence 55 78
18 Threshold;excess capacity 27 30
19 Uncoupler Uncoupler kinetics 51 66


Coupling control states

# O2k-Publications MitoPedia: Coupling control states Comment O2k Total
1 P OXPHOS OXPHOS capacity Oxidative phosphorylation capacity, saturating [ADP] 2123 2317
2 R ROUTINE ROUTINE respiration Physiological state, living cells 632 690
3 E ET ET-capacity Maximal noncoupled respiration 1447 1528
4 L LEAK LEAK respiration Resting state, non-phosphorylating respiration 1761 1887


Pathway control states

# O2k-Publications MitoPedia: Electron transfer-pathway states Comment O2k Total
1 F F-pathway control state Fatty acid oxidation, level 5 437 530
2 N N-pathway control state NADH-linked, level 4 1755 1873
3 S S-pathway control state Succinate-linked, level 3 1183 1252
4 Gp Gp-pathway control state Glycerophosphate-linked, level 3 102 119
5 DQ Duorquinol-linked, level 2 15 18
6 CIV Complex IV single step Ascorbate & TMPD, level 1 498 523
7 NS NS-pathway control state Convergent CI- and CII-linked electron flow to the Q-junction 1081 1126
8 Other 121 136
9 ROX ROX Residual oxygen consumption includes non-mitochondrial respiration 975 1016


MiPMap combinations - examples

Examples for specific combinations
# O2k-Publications MitoPedia: Comment O2k Total
1 O2k-Publications: Human skeletal muscle 854 1060
2 O2k-Publications: Human heart 564 736
3 O2k-Publications: Skeletal muscle - human vs mouse 35 43
Browse data


O2k-Manuals and protocols and specific instrumental applications

# O2k-Publications MitoPedia: Comment O2k Total
1 Oxygraph-2k 3500 3500
2 TIP2k 41 41
3 O2k-Fluorometry 205 210
4 O2k-pH ISE-Module pH
Questions.jpg


Click to expand or collaps


4 5
5 Nitric Oxide 11 11
6 TPP+ ISE-Module Tetraphenylphosphonium
Questions.jpg


Click to expand or collaps
» Keywords: Force and membrane potential
Fundamental relationships
» Force
» Affinity
» Flux
» Advancement
» Advancement per volume
» Stoichiometric number
mt-Membrane potential and protonmotive force
» Protonmotive force
» Mitochondrial membrane potential
» Chemical potential
» Faraday constant
» Format
» Uncoupler
O2k-Potentiometry
» O2k-Catalogue: O2k-TPP+ ISE-Module
» O2k-Manual: MiPNet15.03 O2k-MultiSensor-ISE
» TPP - O2k-Procedures: Tetraphenylphosphonium
» Specifications: MiPNet15.08 TPP electrode
» Poster
» Unspecific binding of TPP+
» TPP+ inhibitory effect
O2k-Fluorometry
» O2k-Catalogue: O2k-FluoRespirometer
» O2k-Manual: MiPNet22.11 O2k-FluoRespirometer manual
» Safranin - O2k-Procedures: MiPNet20.13 Safranin mt-membranepotential / Safranin
» TMRM - O2k-Procedures: TMRM
O2k-Publications
» O2k-Publications: mt-Membrane potential
» O2k-Publications: Coupling efficiency;uncoupling


46 50
7 Calcium 9 9
8 O2k- Spectrophotometer 8 8
9 O2k-Manual 19 20
8 O2k-Protocol 60 76
9 Theoretical background 12 65
10 Instruments;methods 197 292
11 O2k-Fluorometry - Fluorophores 127 127
12 PBI Shredder Homogenate preparation 20 21
# O2k-Publications MitoPedia: Comment O2k Total
1 Twin-Flow respirometry 0 21
2 Separate DatLab applications 24 30